GRN

Rhizobium etli CFN42 and Sinorhizobium meliloti 1021 bioinformatic transcriptional regulatory networks from culture and symbiosis
Rhizobium etli CFN42 proteome–transcriptome mixed data of exponential growth and nitrogen-fixing bacteroids, as well as Sinorhizobium …
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Rhizobium etli CFN42 and Sinorhizobium meliloti 1021 bioinformatic transcriptional regulatory networks from culture and symbiosis
A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp
Entamoeba are amoeboid extracellular parasites that represent an important group of organisms for which the regulatory networks must be …
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A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp
Gene regulatory network inference and gene module regulating virulence in Fusarium oxysporum
In this work, we inferred the gene regulatory network (GRN) of the fungus Fusarium oxysporum by using the regulatory networks of …
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Gene regulatory network inference and gene module regulating virulence in Fusarium oxysporum
Identifying genes devoted to the cell death process in the gene regulatory network of Ustilago maydis
Cell death is a process that can be divided into three morphological patterns: apoptosis, autophagy and necrosis. In fungi, cell death …
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Identifying genes devoted to the cell death process in the gene regulatory network of Ustilago maydis
Gene regulatory networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 inferred by a computational biology approach
Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 are well-known cellulase fungal producers. However, few studies addressing …
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Gene regulatory networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 inferred by a computational biology approach
Transcription factors exhibit differential conservation in bacteria with reduced genomes
The description of transcriptional regulatory networks has been pivotal in the understanding of operating principles under which …
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Transcription factors exhibit differential conservation in bacteria with reduced genomes
Regulatory switches for hierarchical use of carbon sources in E. coli
In this work we study the preferential use of carbon sources in the bacterium Escherichia coli. To that end we engineered …
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Structural comparison of biological networks based on dominant vertices
It is a current practice to organize biological data in a network structure where vertices represent biological components and arrows …
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Structural comparison of biological networks based on dominant vertices
The regulatory network of Pseudomonas aeruginosa
Pseudomonas aeruginosa is an important bacterial model due to its metabolic and pathogenic abilities, which allow it to interact and …
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The regulatory network of Pseudomonas aeruginosa