E. Coli

RNA polymerases in strict endosymbiont bacteria with extreme genome reduction show distinct erosions that might result in limited and differential promoter recognition
Strict endosymbiont bacteria present high degree genome reduction, retain smaller proteins, and in some instances, lack complete …
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Consensus architecture of promoters and transcription units in Escherichia coli: design principles for synthetic biology
Genetic information in genomes is ordered, arranged in such a way that it constitutes a code, the so-called cis regulatory code. The …
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Consensus architecture of promoters and transcription units in Escherichia coli: design principles for synthetic biology
Regulatory switches for hierarchical use of carbon sources in E. coli
In this work we study the preferential use of carbon sources in the bacterium Escherichia coli. To that end we engineered …
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Structural comparison of biological networks based on dominant vertices
It is a current practice to organize biological data in a network structure where vertices represent biological components and arrows …
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Structural comparison of biological networks based on dominant vertices