Publications

Raúl Galindo-Hernández, Katya Rodríguez-Vázquez, Edgardo Galán Vásquez, Carlos Ignacio Hernández Castellanos (2025). Online-adjusted evolutionary biclustering algorithm to identify significant modules in gene expression data. Brief Bioinform.

André Borges Farias, Gustavo Sganzerla Martinez, Edgardo Galán Vásquez, Marisa Fabiana Nicolás, Ernesto Pérez-Rueda (2024). Predicting bacterial transcription factor binding sites through machine learning and structural characterization based on DNA duplex stability. Briefings in Bioinformatics.

José Antonio Motilla-Chávez, Edgardo Ugalde, Edgardo Galán Vásquez (2024). Social networks from dailies: the observer’s point of view. Appl Netw Sci.

Hermenegildo Taboada-Castro, Alfredo José Hernández-Álvarez, Juan Miguel Escorcia-Rodríguez, Julio Augusto Freyre-González, Edgardo Galán Vásquez, Sergio Encarnación-Guevara (2024). Rhizobium etli CFN42 and Sinorhizobium meliloti 1021 bioinformatic transcriptional regulatory networks from culture and symbiosis. Front. Bioinform..

María Daniela Mares-Quiñones, Edgardo Galán Vásquez, Ernesto Pérez-Rueda, D. Guillermo Pérez-Ishiwara, María Olivia Medel-Flores, María Del Consuelo Gómez-García (2024). Identification of modules and key genes associated with breast cancer subtypes through network analysis. Scientific Reports.

Kevin J. González-Morelo, Edgardo Galán Vásquez, Ernesto Perez-Rueda, Daniel Garrido (2023). Structure of co-expression networks of Bifidobacterium species in response to human milk oligosaccharides. Frontiers in Molecular Biosciences.

Cinthia v Soberanes-Gutiérrez, Alfredo Castillo-Jiménez, Ernesto Pérez-Rueda, José Ruíz-Herrera, Edgardo Galán Vásquez (2022). Construction and analysis of gene co-expression network in the pathogenic fungus Ustilago maydis. Frontiers in Microbiology.

Edgardo Galán Vásquez, María Del Consuelo Gómez-García, Ernesto Perez-Rueda (2022). A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp. Plos One.

Regnier Cano, Alexandre Rafael Lenz, Edgardo Galán Vásquez, Jorge Humberto Prado, Ernesto Pérez-Rueda (2022). Gene regulatory network inference and gene module regulating virulence in Fusarium oxysporum. Frontiers in Microbiology.

Cynthia Paola Rangel-Chávez, Edgardo Galán Vásquez, Azucena Pescador-Tapia, Luis Delaye, Agustino Martínez-Antonio (2021). RNA polymerases in strict endosymbiont bacteria with extreme genome reduction show distinct erosions that might result in limited and differential promoter recognition. Plos One.

Cinthia v Soberanes-Gutiérrez, Ernesto Pérez-Rueda, José Ruíz-Herrera, Edgardo Galán Vásquez (2021). Identifying genes devoted to the cell death process in the gene regulatory network of Ustilago maydis. Frontiers in Microbiology.

Edgardo Galán Vásquez, Ernesto Perez-Rueda (2021). A landscape for drug-target interactions based on network analysis. Plos One.

Tania Islas-Flores, Edgardo Galán Vásquez, Marco a Villanueva (2021). Screening a Spliced Leader-Based Symbiodinium microadriaticum cDNA library using the yeast-two hybrid system reveals a hemerythrin-like protein as a putative SmicRACK1 ligand. Microorganisms.

Edgardo Galán Vásquez, Beatriz Carely Luna-Olivera, Marcelino Ramírez-Ibáñez, Agustino Martínez-Antonio (2020). RegulomePA: a database of transcriptional regulatory interactions in Pseudomonas aeruginosa PAO1. Database.

Alexandre Rafael Lenz, Edgardo Galán Vásquez, Eduardo Balbinot, Fernanda Pessi De Abreu, Nikael Souza De Oliveira, LetíCia OsóRio Da Rosa, Scheila De Avila E Silva, Marli Camassola, Aldo José Pinheiro Dillon, Ernesto Perez-Rueda (2020). Gene regulatory networks of Penicillium echinulatum 2HH and Penicillium oxalicum 114-2 inferred by a computational biology approach. Frontiers in Microbiology.

Domingo Martínez-Soto, John Martin Velez-Haro, Claudia Geraldine León-Ramírez, Edgardo Galán Vásquez, Bibiana Chávez-Munguía-, José Ruiz-Herrera (2020). Multicellular growth of the Basidiomycota phytopathogen fungus Sporisorium reilianum induced by acid conditions. Folia Microbiologica.

Rafael Hernandez-Guerrero, Edgardo Galán Vásquez, Ernesto Perez-Rueda (2019). The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains. Plos One.

Edgardo Galán Vásquez, Ernesto Perez-Rueda (2019). Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data. Frontiers in Molecular Biosciences.

Cynthia Rangel Chavez, Edgardo Galán Vásquez, Agustino Martínez-Antonio (2017). Consensus architecture of promoters and transcription units in Escherichia coli: design principles for synthetic biology. Molecular BioSystems.

Edgardo Galán Vásquez, Ismael Sanchez-Osorio, Agustino Martínez-Antonio (2016). Transcription factors exhibit differential conservation in bacteria with reduced genomes. Molecular BioSystems.

Ruth S. Pérez-Alfaro, Moisés Santillán, Edgardo Galán Vásquez, Agustino Martínez-Antonio (2014). Regulatory switches for hierarchical use of carbon sources in E. coli. Network Biology.

Beatriz Luna, Edgardo Galán Vásquez, Edgardo Ugalde, Agustino Martínez-Antonio (2013). Structural comparison of biological networks based on dominant vertices. Molecular BioSystems.

Edgardo Galán Vásquez, Beatriz Luna, Agustino Martínez-Antonio (2011). The regulatory network of Pseudomonas aeruginosa. Microb Informatics Exp.